zotero/translators/PubFactory Journals.js

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{
"translatorID": "8d1fb775-df6d-4069-8830-1dfe8e8387dd",
"translatorType": 4,
"label": "PubFactory Journals",
"creator": "Brendan O'Connell",
"target": "^https://([^/]+/view/journals/.+\\.xml|[^.]*journals\\.[^/]+/search)\\b",
"minVersion": "5.0",
"maxVersion": null,
"priority": 200,
"inRepository": true,
"browserSupport": "gcsibv",
"lastUpdated": "2024-06-14 04:50:00"
}
/*
***** BEGIN LICENSE BLOCK *****
Copyright © 2023 Brendan O'Connell
This file is part of Zotero.
Zotero is free software: you can redistribute it and/or modify
it under the terms of the GNU Affero General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
Zotero is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU Affero General Public License for more details.
You should have received a copy of the GNU Affero General Public License
along with Zotero. If not, see <http://www.gnu.org/licenses/>.
***** END LICENSE BLOCK *****
*/
function detectWeb(doc) {
// EM works well on single articles, so detectWeb() isn't strictly necessary for them.
// However, single articles are included in this translator
// so that 'multiple' doesn't get called for articles with "Related Items"
// e.g. https://avmajournals.avma.org/view/journals/javma/261/4/javma.22.11.0518.xml
// because there are multiple items that match the rows selector in getSearchResults and
// haven't found a way to write a querySelectorAll() that only matches the main article on single pages
// with related items.
if (doc.querySelector('meta[property="og:type"][content="article"]')
&& text(doc, '#footerWrap').includes('PubFactory')) {
return "journalArticle";
}
else if (getSearchResults(doc, true)) {
return 'multiple';
}
return false;
}
function getSearchResults(doc, checkOnly) {
var items = {};
var found = false;
let linkSelector = 'a[href^="/"][href*=".xml"]';
let rows = doc.querySelectorAll(`#searchContent ${linkSelector}, .issue-toc ${linkSelector}`);
for (let row of rows) {
let href = row.href;
let title = ZU.trimInternal(row.innerText);
if (!href || !title || /\bissue-.+\.xml\b/.test(href)) continue;
if (checkOnly) return true;
found = true;
items[href] = title;
}
return found ? items : false;
}
async function doWeb(doc, url) {
if (detectWeb(doc, url) == 'multiple') {
let items = await Zotero.selectItems(getSearchResults(doc, false));
if (!items) return;
for (let url of Object.keys(items)) {
await scrape(await requestDocument(url));
}
}
else {
await scrape(doc, url);
}
}
async function scrape(doc, url = doc.location.href) {
if (doc.querySelector('meta[name="citation_pdf_url"]')) {
var pdfURL = attr(doc, 'meta[name="citation_pdf_url"]', "content");
}
let translator = Zotero.loadTranslator('web');
// Embedded Metadata
translator.setTranslator('951c027d-74ac-47d4-a107-9c3069ab7b48');
translator.setDocument(doc);
translator.setHandler('itemDone', (_obj, item) => {
// remove word "Abstract" from abstract if present, e.g. https://journals.ametsoc.org/view/journals/atsc/72/8/jas-d-14-0363.1.xml
var abstract = attr(doc, 'meta[property="og:description"]', "content");
var cleanAbstract = abstract.replace(/^Abstract\s+/i, "");
item.abstractNote = cleanAbstract;
if (pdfURL) {
item.attachments = [];
item.attachments.push({
url: pdfURL,
title: 'Full Text PDF',
mimeType: 'application/pdf'
});
}
item.complete();
});
let em = await translator.getTranslatorObject();
em.itemType = 'journalArticle';
await em.doWeb(doc, url);
}
/** BEGIN TEST CASES **/
var testCases = [
{
"type": "web",
"url": "https://journals.ametsoc.org/view/journals/amsm/59/1/amsm.59.issue-1.xml",
"items": "multiple"
},
{
"type": "web",
"url": "https://journals.humankinetics.com/view/journals/jab/jab-overview.xml",
"items": "multiple"
},
{
"type": "web",
"url": "https://avmajournals.avma.org/view/journals/javma/javma-overview.xml",
"items": "multiple"
},
{
"type": "web",
"url": "https://journals.humankinetics.com/view/journals/ijsnem/33/2/article-p73.xml",
"items": [
{
"itemType": "journalArticle",
"title": "Fasted Sprint Interval Training Results in Some Beneficial Skeletal Muscle Metabolic, but Similar Metabolomic and Performance Adaptations Compared With Carbohydrate-Fed Training in Recreationally Active Male",
"creators": [
{
"firstName": "Tom P.",
"lastName": "Aird",
"creatorType": "author"
},
{
"firstName": "Andrew J.",
"lastName": "Farquharson",
"creatorType": "author"
},
{
"firstName": "Kate M.",
"lastName": "Bermingham",
"creatorType": "author"
},
{
"firstName": "Aifric",
"lastName": "OSullivan",
"creatorType": "author"
},
{
"firstName": "Janice E.",
"lastName": "Drew",
"creatorType": "author"
},
{
"firstName": "Brian P.",
"lastName": "Carson",
"creatorType": "author"
}
],
"date": "2022/12/26",
"DOI": "10.1123/ijsnem.2022-0142",
"ISSN": "1543-2742, 1526-484X",
"abstractNote": "Endurance training in fasted conditions (FAST) induces favorable skeletal muscle metabolic adaptations compared with carbohydrate feeding (CHO), manifesting in improved exercise performance over time. Sprint interval training (SIT) is a potent metabolic stimulus, however nutritional strategies to optimize adaptations to SIT are poorly characterized. Here we investigated the efficacy of FAST versus CHO SIT (46×30-s Wingate sprints interspersed with 4-min rest) on muscle metabolic, serum metabolome and exercise performance adaptations in a double-blind parallel group design in recreationally active males. Following acute SIT, we observed exercise-induced increases in pan-acetylation and several genes associated with mitochondrial biogenesis, fatty acid oxidation, and NAD+-biosynthesis, along with favorable regulation of PDK4 (p=.004), NAMPT (p=.0013), and NNMT (p=.001) in FAST. Following 3 weeks of SIT, NRF2 (p=.029) was favorably regulated in FAST, with augmented pan-acetylation in CHO but not FAST (p=.033). SIT induced increases in maximal citrate synthase activity were evident with no effect of nutrition, while 3-hydroxyacyl-CoA dehydrogenase activity did not change. Despite no difference in the overall serum metabolome, training-induced changes in C3:1 (p=.013) and C4:1 (p=.010) which increased in FAST, and C16:1 (p=.046) and glutamine (p=.021) which increased in CHO, were different between groups. Training-induced increases in anaerobic (p=.898) and aerobic power (p=.249) were not influenced by nutrition. These findings suggest some beneficial muscle metabolic adaptations are evident in FAST versus CHO SIT following acute exercise and 3 weeks of SIT. However, this stimulus did not manifest in differential exercise performance adaptations.",
"issue": "2",
"language": "en",
"libraryCatalog": "journals.humankinetics.com",
"pages": "73-83",
"publicationTitle": "International Journal of Sport Nutrition and Exercise Metabolism",
"url": "https://journals.humankinetics.com/view/journals/ijsnem/33/2/article-p73.xml",
"volume": "33",
"attachments": [
{
"title": "Full Text PDF",
"mimeType": "application/pdf"
}
],
"tags": [
{
"tag": "exercise"
},
{
"tag": "fasted"
},
{
"tag": "fasting"
},
{
"tag": "metabolism"
}
],
"notes": [],
"seeAlso": []
}
]
},
{
"type": "web",
"url": "https://thejns.org/view/journals/j-neurosurg/138/3/article-p587.xml",
"items": [
{
"itemType": "journalArticle",
"title": "Intraoperative confocal laser endomicroscopy: prospective in vivo feasibility study of a clinical-grade system for brain tumors",
"creators": [
{
"firstName": "Irakliy",
"lastName": "Abramov",
"creatorType": "author"
},
{
"firstName": "Marian T.",
"lastName": "Park",
"creatorType": "author"
},
{
"firstName": "Evgenii",
"lastName": "Belykh",
"creatorType": "author"
},
{
"firstName": "Alexander B.",
"lastName": "Dru",
"creatorType": "author"
},
{
"firstName": "Yuan",
"lastName": "Xu",
"creatorType": "author"
},
{
"firstName": "Timothy C.",
"lastName": "Gooldy",
"creatorType": "author"
},
{
"firstName": "Lea",
"lastName": "Scherschinski",
"creatorType": "author"
},
{
"firstName": "S. Harrison",
"lastName": "Farber",
"creatorType": "author"
},
{
"firstName": "Andrew S.",
"lastName": "Little",
"creatorType": "author"
},
{
"firstName": "Randall W.",
"lastName": "Porter",
"creatorType": "author"
},
{
"firstName": "Kris A.",
"lastName": "Smith",
"creatorType": "author"
},
{
"firstName": "Michael T.",
"lastName": "Lawton",
"creatorType": "author"
},
{
"firstName": "Jennifer M.",
"lastName": "Eschbacher",
"creatorType": "author"
},
{
"firstName": "Mark C.",
"lastName": "Preul",
"creatorType": "author"
}
],
"date": "2022/07/08",
"DOI": "10.3171/2022.5.JNS2282",
"ISSN": "1933-0693, 0022-3085",
"abstractNote": "OBJECTIVE The authors evaluated the feasibility of using the first clinical-grade confocal laser endomicroscopy (CLE) system using fluorescein sodium for intraoperative in vivo imaging of brain tumors. METHODS A CLE system cleared by the FDA was used in 30 prospectively enrolled patients with 31 brain tumors (13 gliomas, 5 meningiomas, 6 other primary tumors, 3 metastases, and 4 reactive brain tissue). A neuropathologist classified CLE images as interpretable or noninterpretable. Images were compared with corresponding frozen and permanent histology sections, with image correlation to biopsy location using neuronavigation. The specificities and sensitivities of CLE images and frozen sections were calculated using permanent histological sections as the standard for comparison. A recently developed surgical telepathology software platform was used in 11 cases to provide real-time intraoperative consultation with a neuropathologist. RESULTS Overall, 10,713 CLE images from 335 regions of interest were acquired. The mean duration of the use of the CLE system was 7 minutes (range 318 minutes). Interpretable CLE images were obtained in all cases. The first interpretable image was acquired within a mean of 6 (SD 10) images and within the first 5 (SD 13) seconds of imaging; 4896 images (46%) were interpretable. Interpretable image acquisition was positively correlated with study progression, number of cases per surgeon, cumulative length of CLE time, and CLE time per case (p ≤ 0.01). The diagnostic accuracy, sensitivity, and specificity of CLE compared with frozen sections were 94%, 94%, and 100%, respectively, and the diagnostic accuracy, sensitivity, and specificity of CLE compared with permanent histological sections were 92%, 90%, and 94%, respectively. No difference was observed between lesion types for the time to first interpretable image (p = 0.35). Deeply located lesions were associated with a higher percentage of interpretable images than superficial lesions (p = 0.02). The study met the primary end points, confirming the safety and feasibility and acquisition of noninvasive digital biopsies in all cases. The study met the secondary end points for the duration of CLE use necessary to obtain interpretable images. A neuropathologist could interpret the CLE images in 29 (97%) of 30 cases. CONCLUSIONS The clinical-grade CLE system allows in vivo, intraoperative, high-resolution cellular visualization of tissue microstructure and identification of lesional tissue patterns in real time, without the need for tissue preparation.",
"issue": "3",
"language": "EN",
"libraryCatalog": "thejns.org",
"pages": "587-597",
"publicationTitle": "Journal of Neurosurgery",
"shortTitle": "Intraoperative confocal laser endomicroscopy",
"url": "https://thejns.org/view/journals/j-neurosurg/138/3/article-p587.xml",
"volume": "138",
"attachments": [
{
"title": "Full Text PDF",
"mimeType": "application/pdf"
}
],
"tags": [
{
"tag": "confocal laser endomicroscopy"
},
{
"tag": "fluorescence-guided surgery"
},
{
"tag": "intraoperative diagnosis"
},
{
"tag": "neuropathology"
},
{
"tag": "neurosurgery"
},
{
"tag": "oncology"
},
{
"tag": "telemedicine"
}
],
"notes": [],
"seeAlso": []
}
]
},
{
"type": "web",
"url": "https://journals.ametsoc.org/view/journals/atsc/72/8/jas-d-14-0363.1.xml",
"items": [
{
"itemType": "journalArticle",
"title": "Observations of Ice Microphysics through the Melting Layer",
"creators": [
{
"firstName": "Andrew J.",
"lastName": "Heymsfield",
"creatorType": "author"
},
{
"firstName": "Aaron",
"lastName": "Bansemer",
"creatorType": "author"
},
{
"firstName": "Michael R.",
"lastName": "Poellot",
"creatorType": "author"
},
{
"firstName": "Norm",
"lastName": "Wood",
"creatorType": "author"
}
],
"date": "2015/08/01",
"DOI": "10.1175/JAS-D-14-0363.1",
"ISSN": "0022-4928, 1520-0469",
"abstractNote": "The detailed microphysical processes and properties within the melting layer (ML)—the continued growth of the aggregates by the collection of the small particles, the breakup of these aggregates, the effects of relative humidity on particle melting—are largely unresolved. This study focuses on addressing these questions for in-cloud heights from just above to just below the ML. Observations from four field programs employing in situ measurements from above to below the ML are used to characterize the microphysics through this region. With increasing temperatures from about 4° to +1°C, and for saturated conditions, slope and intercept parameters of exponential fits to the particle size distributions (PSD) fitted to the data continue to decrease downward, the maximum particle size (largest particle sampled for each 5-s PSD) increases, and melting proceeds from the smallest to the largest particles. With increasing temperature from about 4° to +2°C for highly subsaturated conditions, the PSD slope and intercept continue to decrease downward, the maximum particle size increases, and there is relatively little melting, but all particles experience sublimation.",
"issue": "8",
"language": "EN",
"libraryCatalog": "journals.ametsoc.org",
"pages": "2902-2928",
"publicationTitle": "Journal of the Atmospheric Sciences",
"url": "https://journals.ametsoc.org/view/journals/atsc/72/8/jas-d-14-0363.1.xml",
"volume": "72",
"attachments": [
{
"title": "Full Text PDF",
"mimeType": "application/pdf"
}
],
"tags": [
{
"tag": "Cloud microphysics"
},
{
"tag": "Cloud retrieval"
},
{
"tag": "Cloud water/phase"
},
{
"tag": "Ice crystals"
},
{
"tag": "Ice particles"
},
{
"tag": "In situ atmospheric observations"
}
],
"notes": [],
"seeAlso": []
}
]
},
{
"type": "web",
"url": "https://akjournals.com/view/journals/2006/12/2/article-p303.xml?rskey=lLnjOM&result=2",
"items": [
{
"itemType": "journalArticle",
"title": "Thinking beyond cut-off scores in the assessment of potentially addictive behaviors: A brief illustration in the context of binge-watching",
"creators": [
{
"firstName": "Pauline",
"lastName": "Billaux",
"creatorType": "author"
},
{
"firstName": "Joël",
"lastName": "Billieux",
"creatorType": "author"
},
{
"firstName": "Stéphanie",
"lastName": "Baggio",
"creatorType": "author"
},
{
"firstName": "Pierre",
"lastName": "Maurage",
"creatorType": "author"
},
{
"firstName": "Maèva",
"lastName": "Flayelle",
"creatorType": "author"
}
],
"date": "2023/06/30",
"DOI": "10.1556/2006.2023.00032",
"ISSN": "2063-5303, 2062-5871",
"abstractNote": "While applying a diagnostic approach (i.e., comparing “clinical” cases with “healthy” controls) is part of our methodological habits as researchers and clinicians, this approach has been particularly criticized in the behavioral addictions research field, in which a lot of studies are conducted on “emerging” conditions. Here we exemplify the pitfalls of using a cut-off-based approach in the context of binge-watching (i.e., watching multiple episodes of series back-to-back) by demonstrating that no reliable cut-off scores could be determined with a widely used assessment instrument measuring binge-watching.",
"issue": "2",
"language": "en",
"libraryCatalog": "akjournals.com",
"pages": "303-308",
"publicationTitle": "Journal of Behavioral Addictions",
"shortTitle": "Thinking beyond cut-off scores in the assessment of potentially addictive behaviors",
"url": "https://akjournals.com/view/journals/2006/12/2/article-p303.xml",
"volume": "12",
"attachments": [
{
"title": "Full Text PDF",
"mimeType": "application/pdf"
}
],
"tags": [
{
"tag": "addictive behaviors"
},
{
"tag": "behavioral addictions"
},
{
"tag": "binge-watching"
},
{
"tag": "cut-off scores"
}
],
"notes": [],
"seeAlso": []
}
]
},
{
"type": "web",
"url": "https://akjournals.com/view/journals/2006/12/2/2006.12.issue-2.xml",
"items": "multiple"
},
{
"type": "web",
"url": "https://akjournals.com/view/journals/606/aop/issue.xml",
"items": "multiple"
},
{
"type": "web",
"url": "https://jnccn.org/view/journals/jnccn/21/6/jnccn.21.issue-6.xml",
"items": "multiple"
},
{
"type": "web",
"url": "https://jnccn.org/view/journals/jnccn/21/6/article-p685.xml",
"items": [
{
"itemType": "journalArticle",
"title": "Increasing Private Payer and Medicare Coverage of Circulating Tumor DNA Tests: Whats at Stake?",
"creators": [
{
"firstName": "Mariana P.",
"lastName": "Socal",
"creatorType": "author"
}
],
"date": "2023/06/01",
"DOI": "10.6004/jnccn.2023.7038",
"ISSN": "1540-1405, 1540-1413",
"abstractNote": "\"Increasing Private Payer and Medicare Coverage of Circulating Tumor DNA Tests: Whats at Stake?\" published on Jun 2023 by National Comprehensive Cancer Network.",
"issue": "6",
"language": "EN",
"libraryCatalog": "jnccn.org",
"pages": "685-686",
"publicationTitle": "Journal of the National Comprehensive Cancer Network",
"shortTitle": "Increasing Private Payer and Medicare Coverage of Circulating Tumor DNA Tests",
"url": "https://jnccn.org/view/journals/jnccn/21/6/article-p685.xml",
"volume": "21",
"attachments": [
{
"title": "Full Text PDF",
"mimeType": "application/pdf"
}
],
"tags": [],
"notes": [],
"seeAlso": []
}
]
},
{
"type": "web",
"url": "https://www.ajtmh.org/view/journals/tpmd/109/1/tpmd.109.issue-1.xml",
"items": "multiple"
},
{
"type": "web",
"url": "https://akjournals.com/view/journals/2006/12/2/article-p303.xml?rskey=lLnjOM&result=2",
"items": [
{
"itemType": "journalArticle",
"title": "Thinking beyond cut-off scores in the assessment of potentially addictive behaviors: A brief illustration in the context of binge-watching",
"creators": [
{
"firstName": "Pauline",
"lastName": "Billaux",
"creatorType": "author"
},
{
"firstName": "Joël",
"lastName": "Billieux",
"creatorType": "author"
},
{
"firstName": "Stéphanie",
"lastName": "Baggio",
"creatorType": "author"
},
{
"firstName": "Pierre",
"lastName": "Maurage",
"creatorType": "author"
},
{
"firstName": "Maèva",
"lastName": "Flayelle",
"creatorType": "author"
}
],
"date": "2023/06/30",
"DOI": "10.1556/2006.2023.00032",
"ISSN": "2063-5303, 2062-5871",
"abstractNote": "While applying a diagnostic approach (i.e., comparing “clinical” cases with “healthy” controls) is part of our methodological habits as researchers and clinicians, this approach has been particularly criticized in the behavioral addictions research field, in which a lot of studies are conducted on “emerging” conditions. Here we exemplify the pitfalls of using a cut-off-based approach in the context of binge-watching (i.e., watching multiple episodes of series back-to-back) by demonstrating that no reliable cut-off scores could be determined with a widely used assessment instrument measuring binge-watching.",
"issue": "2",
"language": "en",
"libraryCatalog": "akjournals.com",
"pages": "303-308",
"publicationTitle": "Journal of Behavioral Addictions",
"shortTitle": "Thinking beyond cut-off scores in the assessment of potentially addictive behaviors",
"url": "https://akjournals.com/view/journals/2006/12/2/article-p303.xml",
"volume": "12",
"attachments": [
{
"title": "Full Text PDF",
"mimeType": "application/pdf"
}
],
"tags": [
{
"tag": "addictive behaviors"
},
{
"tag": "behavioral addictions"
},
{
"tag": "binge-watching"
},
{
"tag": "cut-off scores"
}
],
"notes": [],
"seeAlso": []
}
]
},
{
"type": "web",
"url": "https://journals.humankinetics.com/view/journals/jab/39/3/jab.39.issue-3.xml",
"items": "multiple"
},
{
"type": "web",
"url": "https://journals.ametsoc.org/view/journals/amsm/59/1/amsmonographs-d-18-0006.1.xml?tab_body=abstract-display",
"items": [
{
"itemType": "journalArticle",
"title": "100 Years of Progress in Atmospheric Observing Systems",
"creators": [
{
"firstName": "Jeffrey L.",
"lastName": "Stith",
"creatorType": "author"
},
{
"firstName": "Darrel",
"lastName": "Baumgardner",
"creatorType": "author"
},
{
"firstName": "Julie",
"lastName": "Haggerty",
"creatorType": "author"
},
{
"firstName": "R. Michael",
"lastName": "Hardesty",
"creatorType": "author"
},
{
"firstName": "Wen-Chau",
"lastName": "Lee",
"creatorType": "author"
},
{
"firstName": "Donald",
"lastName": "Lenschow",
"creatorType": "author"
},
{
"firstName": "Peter",
"lastName": "Pilewskie",
"creatorType": "author"
},
{
"firstName": "Paul L.",
"lastName": "Smith",
"creatorType": "author"
},
{
"firstName": "Matthias",
"lastName": "Steiner",
"creatorType": "author"
},
{
"firstName": "Holger",
"lastName": "Vömel",
"creatorType": "author"
}
],
"date": "2018/01/01",
"DOI": "10.1175/AMSMONOGRAPHS-D-18-0006.1",
"abstractNote": "Although atmospheric observing systems were already an important part of meteorology before the American Meteorological Society was established in 1919, the past 100 years have seen a steady increase in their numbers and types. Examples of how observing systems were developed and how they have enabled major scientific discoveries are presented. These examples include observing systems associated with the boundary layer, the upper air, clouds and precipitation, and solar and terrestrial radiation. Widely used specialized observing systems such as radar, lidar, and research aircraft are discussed, and examples of applications to weather forecasting and climate are given. Examples drawn from specific types of chemical measurements, such as ozone and carbon dioxide, are included. Sources of information on observing systems, including other chapters of this monograph, are also discussed. The past 100 years has been characterized by synergism between societal needs for weather observations and the needs of fundamental meteorological research into atmospheric processes. In the latter half of the period, observing system improvements have been driven by the increasing demands for higher-resolution data for numerical models, the need for long-term measurements, and for more global coverage. This has resulted in a growing demand for data access and for integrating data from an increasingly wide variety of observing system types and networks. These trends will likely continue.",
"issue": "1",
"language": "EN",
"libraryCatalog": "journals.ametsoc.org",
"pages": "2.1-2.55",
"publicationTitle": "Meteorological Monographs",
"url": "https://journals.ametsoc.org/view/journals/amsm/59/1/amsmonographs-d-18-0006.1.xml",
"volume": "59",
"attachments": [
{
"title": "Full Text PDF",
"mimeType": "application/pdf"
}
],
"tags": [
{
"tag": "Aircraft observations"
},
{
"tag": "Automatic weather stations"
},
{
"tag": "Dropsondes"
},
{
"tag": "Profilers"
},
{
"tag": "Radars/Radar observations"
},
{
"tag": "Radiosonde observations"
},
{
"tag": "atmospheric"
}
],
"notes": [],
"seeAlso": []
}
]
}
]
/** END TEST CASES **/